2D Heat Equation Code (Finite Difference Method)

     After 🎉 successfully teaching 👨‍🏫 the neural network about the 🔥 heat / diffusion 💉 equation, yours truly thought it is the time ⏱️ to write a simple code 🖥️ for discretized domain as well. A code yours truly created in abundant spare time is mentioned in this blog 📖.

     A complex (sinusoidal) 🌊 boundary condition is implemented. Dirichlet and Neumann boundary conditions are also implemented. The code is vectorized ↗ so there is only one loop 😁.  CFL condition is implemented in the time-step calculation so time-step ⏳ is adjusted based on the mesh size automatically 😇.

     For simple geometries, traditional numerical methods are is still better than PINNs. 🧠

Code

#Copyright <2024> <FAHAD BUTT>

#Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

#The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

#THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

import numpy as np

import matplotlib.pyplot as plt

# mesh parameters

L = 1 # length of plate

D = np.pi # width of plate

h = 1 / 50 # grid size

Nx = int((L / h) + 1) # grid points in x-axis

Ny = int((D / h) + 1) # grid points in y-axis

alpha = 1 # thermal diffusivity

dt = h**2 / (4 * alpha) # time step (based on CFL condition)

total_time = 1 # total time

nt = int(total_time / dt) # total time steps

# initialization

T = np.zeros((Nx, Ny)) # initial condition

T_new = np.zeros_like(T)

x = np.linspace(0, L, Nx)

y = np.linspace(0, D, Ny)

# solve 2D-transient heat equation

for n in range(nt):

    T_new[1:-1, 1:-1] = T[1:-1, 1:-1] + ((alpha * dt) / h**2) * (T[2:, 1:-1] + T[:-2, 1:-1] + T[1:-1, 2:] + T[1:-1, :-2] - 4 * T[1:-1, 1:-1])

    T[:, :] = T_new

    # apply boundary conditions

    T[0, :] = np.sin(2 * np.pi * y / D) # T = sin(y) at x = 0

    T[-1, :] = T[-2, :] # dT/dx = 0 at x = L

    T[:, 0] = 0 # T = 0 at y = 0

    T[:, -1] = 0 # T = 0 at y = D

# plotting

X, Y = np.meshgrid(x, y, indexing="ij")

plt.figure(dpi = 500)

plt.contourf(X, Y, T, levels = 64, cmap = "jet")

plt.gca().set_aspect('equal', adjustable = 'box')

plt.colorbar(label = "Temperature")

plt.title("Temperature Distribution")

plt.xlabel("x")

plt.ylabel("y")

plt.show()

     The code creates the output as shown in Fig. 1.

Fig. 1, Temperature distribution

     Thank you for reading! If you want to hire me as a post-doc researcher in the fields of thermo-fluids and / or fracture mechanics, do reach out!

14th Step of the 12 steps to Navier-Stokes 😑

     After the tremendous success of 13th Step (thanks to the two people who read it, don't understand why they even bothered? 😂) The 14th step now exists! This case is called the case of flow around an obstacle! Like a box. ⬜ This is an unofficial continuation to this. If I get it approved by Dr. Barba, then it will be official. The original series is in Python but I coded this in MATLAB without using many MATLAB specific functions so the code can be translated to other programing languages 🖧 quite easily 😊.

     In terms of validation, Strouhal number is at 0.145 [1-4] for flow around a square cylinder at Re 100. This code gives St of 0.141. 🤓 Fig. 1 shows results from the code.

Fig. 1, Post processing

Code

%% clear and close

close all

clear

clc

beep off % annoying beep off :)

%% define spatial and temporal grids

l_square = 1; % length of square

h = l_square/10; % grid spacing

dt = 1; % time step

L = 40; % cavity length

D = 15; % cavity depth

Nx = round((L/h)+1); % grid points in x-axis

Ny = round((D/h)+1); % grid points in y-axis

nu = 0.000015111; % kinematic viscosity

Uinf = 0.0015111; % free stream velocity / inlet velocity  / lid velocity

cfl = dt*Uinf/h; % % cfl number

travel = 10; % times the disturbance travels entire length of computational domain

TT = travel*L/Uinf; % total time

ns = TT/dt; % number of time steps

Re = l_square*Uinf/nu; % Reynolds number

rho = 1.2047; % fluid density

%% initialize flowfield

u = Uinf*ones(Nx,Ny); % x-velocity

v = zeros(Nx,Ny); % y-velocity

p = zeros(Nx,Ny); % pressure

i = 2:Nx-1; % spatial interior nodes in x-axis

j = 2:Ny-1; % spatial interior nodes in y-axis

[X, Y] = meshgrid(0:h:L, 0:h:D); % spatial grid

maxNumCompThreads('automatic'); % select CPU cores

%% solve 2D Navier-Stokes equations

for nt = 1:ns

    pn = p;

    p(i, j) = (pn(i+1, j)+pn(i-1, j)+pn(i, j+1)+pn(i, j-1))/4 ...

        -h*rho/(8*dt)*(u(i+1, j)-u(i-1, j)+v(i, j+1)-v(i, j-1)); % pressure poisson

    p(1, :) = p(2, :); % dp/dx = 0 at x = 0

    p(Nx, :) = 0; % p = 0 at x = L

    p(:, 1) = p(:, 2); % dp/dy = 0 at y = 0

    p(:, Ny) = p(:, Ny-1); % dp/dy = 0 at y = D

    p(round(5*Nx/L:6*Nx/L), round(7*Ny/D:8*Ny/D)) = 0; % box geometry

    p(round(5*Nx/L), round(7*Ny/D:8*Ny/D)) = p(round(5*Nx/L)-1, round(7*Ny/D:8*Ny/D)); % left side

    p(round(6*Nx/L), round(7*Ny/D:8*Ny/D)) = p(round(6*Nx/L)+1, round(7*Ny/D:8*Ny/D)); % right side

    p(round(5*Nx/L:6*Nx/L), round(7*Ny/D)) = p(round(5*Nx/L:6*Nx/L), round(7*Ny/D)-1); % bottom side

    p(round(5*Nx/L:6*Nx/L), round(8*Ny/D)) = p(round(5*Nx/L:6*Nx/L), round(8*Ny/D)+1); % top side

    un = u;

    vn = v;

    u(i, j) = un(i, j)-dt/(2 * h)*(un(i, j).*(un(i+1, j)-un(i-1, j))+vn(i, j).*(un(i, j+1)-un(i, j-1))) ...

        -dt/(2*rho*h)*(p(i+1, j)-p(i-1, j)) ...

        +nu*dt/h^2*(un(i+1, j)+un(i-1, j)+un(i, j+1)+un(i, j-1)-4*un(i, j)); % x-momentum

    u(1, :) = Uinf; % u = Uinf at x = L

    u(Nx, :) = u(Nx-1, :); % du/dx = 0 at x = L

    u(:, 1) = 0; % u = 0 at y = 0

    u(:, Ny) = 0; % u = 0 at y = D

    u(round(5*Nx/L:6*Nx/L), round(7*Ny/D:8*Ny/D)) = 0; % box geometry

    u(round(5*Nx/L), round(7*Ny/D:8*Ny/D)) = 0; % left side

    u(round(6*Nx/L), round(7*Ny/D:8*Ny/D)) = 0; % right side

    u(round(5*Nx/L:6*Nx/L), round(7*Ny/D)) = 0; % bottom side

    u(round(5*Nx/L:6*Nx/L), round(8*Ny/D)) = 0; % top side

    v(i, j) = vn(i, j)-dt/(2*h)*(un(i, j).*(vn(i+1, j)-vn(i-1, j))+vn(i, j).*(vn(i, j+1)-vn(i, j-1))) ...

        -dt/(2*rho*h)*(p(i, j+1)-p(i, j-1)) ...

        + nu*dt/h^2*(vn(i+1, j)+vn(i-1, j)+vn(i, j+1)+vn(i, j-1)-4*vn(i, j)); % y-momentum

    v(1, :) = 0; % v = 0 at x = L

    v(Nx, :) = v(Nx-1, :); % dv/dx = 0 at x = L

    v(:, 1) = 0; % v = 0 at y = 0

    v(:, Ny) = 0; % v = 0 at y = D

    v(round(5*Nx/L:6*Nx/L), round(7*Ny/D:8*Ny/D)) = 0; % box geometry

    v(round(5*Nx/L), round(7*Ny/D:8*Ny/D)) = 0; % left side

    v(round(6*Nx/L), round(7*Ny/D:8*Ny/D)) = 0; % right side

    v(round(5*Nx/L:6*Nx/L), round(7*Ny/D)) = 0; % bottom side

    v(round(5*Nx/L:6*Nx/L), round(8*Ny/D)) = 0; % top side

end

%% post-processing

velocity_magnitude = sqrt(u.^2 + v.^2); % velocity magnitude

u1 = u; % u-velocity for plotting with box

v1 = v; % v-velocity for plotting with box

p1 = p; % p-velocity for plotting with box

u1(round(5*Nx/L:6*Nx/L), round(7*Ny/D:8*Ny/D)) = NaN; % step geometry

v1(round(5*Nx/L:6*Nx/L), round(7*Ny/D:8*Ny/D)) = NaN; % step geometry

p1(round(5*Nx/L:6*Nx/L), round(7*Ny/D:8*Ny/D)) = NaN; % step geometry

velocity_magnitude1 = sqrt(u1.^2 + v1.^2); % velocity magnitude with box

%% Visualize velocity vectors and pressure contours

hold on, axis off

contourf(X, Y, u1', 64, 'LineColor', 'none'); % contour plot

set(gca, 'FontSize', 20)

hh = streamslice(X, Y, u1', v1', 20); % streamlines

set(hh, 'Color', 'k','LineWidth', 01);

colorbar; % add color bar

colormap jet % set color map

axis equal % set true scale

xlim([0 L]); % set axis limits

ylim([2 13]);

xticks([0 L]) % set ticks

yticks([0 D]) % set ticks

xlabel('x [m]');

ylabel('y [m]');

Cite as:

Fahad Butt (2024). Flow Around Square Cylinder (https://fluiddynamicscomputer.blogspot.com/), Blogger. Retrieved Month Date, Year

Copyright <2024> <Fahad Butt>

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Python version:

     As the original series is in Python, here is the Python code for Step 14 of 12. Also, I removed mixed terms from pressure poisson equation, just because 😁.

# Copyright <2024> <FAHAD BUTT>

# Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

# The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

# THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

#%% import libraries

import numpy as np

import matplotlib.pyplot as plt

#%% define spatial and temporal grids

l_square = 1  # length of square

h = l_square / 10  # grid spacing

dt = 10  # time step

L = 35  # domain length

D = 21  # domain depth

Nx = round(L / h) + 1  # grid points in x-axis

Ny = round(D / h) + 1  # grid points in y-axis

nu = 0.000015111  # kinematic viscosity

Uinf = 0.0015111  # free stream velocity / inlet velocity / lid velocity

cfl = dt * Uinf / h  # cfl number

travel = 10 # times the disturbance travels entire length of computational domain

TT = travel * L / Uinf  # total time

ns = int(TT / dt)  # number of time steps

Re = round(l_square * Uinf / nu) # Reynolds number

rho = 1.2047  # fluid density

#%% initialize flowfield

u = Uinf * np.ones((Nx, Ny))  # x-velocity

v = np.zeros((Nx, Ny))  # y-velocity

p = np.zeros((Nx, Ny))  # pressure

X, Y = np.meshgrid(np.linspace(0, L, Nx), np.linspace(0, D, Ny))  # spatial grid

#%% Solve 2D Navier-Stokes equations

for nt in range(ns):

    pn = p.copy()

    p[1:-1, 1:-1] = (pn[2:, 1:-1] + pn[:-2, 1:-1] + pn[1:-1, 2:] + pn[1:-1, :-2]) / 4 - h * rho / (8 * dt) * (u[2:, 1:-1] - u[:-2, 1:-1] + v[1:-1, 2:] - v[1:-1, :-2]) # pressure

    # boundary conditions for pressure

    p[0, :] = p[1, :]  # dp/dx = 0 at x = 0

    p[-1, :] = 0  # p = 0 at x = L

    p[:, 0] = p[:, 1]  # dp/dy = 0 at y = 0

    p[:, -1] = p[:, -2]  # dp/dy = 0 at y = D

    p[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = 0 # box geometry

    p[round(10 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = p[round(10 * Nx / L) - 1, round(10 * Ny / D):round(11 * Ny / D)] # box left

    p[round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = p[round(11 * Nx / L) + 1, round(10 * Ny / D):round(11 * Ny / D)] # box right

    p[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D)] = p[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D) - 1] # box bottom

    p[round(10 * Nx / L):round(11 * Nx / L), round(11 * Ny / D)] = p[round(10 * Nx / L):round(11 * Nx / L), round(11 * Ny / D) + 1] # box top

    un = u.copy()

    vn = v.copy()

    u[1:-1, 1:-1] = (un[1:-1, 1:-1] - dt / (2 * h) * (un[1:-1, 1:-1] * (un[2:, 1:-1] - un[:-2, 1:-1]) + vn[1:-1, 1:-1] * (un[1:-1, 2:] - un[1:-1, :-2])) - dt / (2 * rho * h) * (p[2:, 1:-1] - p[:-2, 1:-1]) + nu * dt / h**2 * (un[2:, 1:-1] + un[:-2, 1:-1] + un[1:-1, 2:] + un[1:-1, :-2] - 4 * un[1:-1, 1:-1])) # x momentum

    # boundary conditions for x-velocity

    u[0, :] = Uinf  # u = Uinf at x = L

    u[-1, :] = u[-2, :]  # du/dx = 0 at x = L

    u[:, 0] = Uinf  # u = 0 at y = 0

    u[:, -1] = Uinf  # u = 0 at y = D

    u[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = 0 # box geometry

    u[round(10 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = 0 # box left

    u[round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = 0 # box right

    u[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D)] = 0 # box bottom

    u[round(11 * Nx / L):round(11 * Nx / L), round(11 * Ny / D)] = 0 # box top

    v[1:-1, 1:-1] = (vn[1:-1, 1:-1] - dt / (2 * h) * (un[1:-1, 1:-1] * (vn[2:, 1:-1] - vn[:-2, 1:-1]) + vn[1:-1, 1:-1] * (vn[1:-1, 2:] - vn[1:-1, :-2])) - dt / (2 * rho * h) * (p[1:-1, 2:] - p[1:-1, :-2]) + nu * dt / h**2 * (vn[2:, 1:-1] + vn[:-2, 1:-1] + vn[1:-1, 2:] + vn[1:-1, :-2] - 4 * vn[1:-1, 1:-1])) # y momentum

    # boundary conditions for y-velocity

    v[0, :] = 0  # v = 0 at x = L

    v[-1, :] = v[-2, :]  # dv/dx = 0 at x = L

    v[:, 0] = 0  # v = 0 at y = 0

    v[:, -1] = 0  # v = 0 at y = D

    v[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = 0 # box geometry

    v[round(10 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = 0 # box left

    v[round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = 0 # box right

    v[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D)] = 0 # box bottom

    v[round(11 * Nx / L):round(11 * Nx / L), round(11 * Ny / D)] = 0 # box top

#%% post-processing

velocity_magnitude = np.sqrt(u**2 + v**2)  # velocity magnitude

u1 = u.copy()  # u-velocity for plotting with box

v1 = v.copy()  # v-velocity for plotting with box

p1 = p.copy()  # p-velocity for plotting with box

# box geometry for plotting

u1[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)] = np.nan

v1[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)]  = np.nan

p1[round(10 * Nx / L):round(11 * Nx / L), round(10 * Ny / D):round(11 * Ny / D)]  = np.nan

velocity_magnitude1 = np.sqrt(u1**2 + v1**2)  # velocity magnitude with box

# visualize velocity vectors and pressure contours

plt.figure(dpi = 500)

plt.contourf(X, Y, u1.T, 128, cmap = 'hsv')

# plt.colorbar()

plt.gca().set_aspect('equal', adjustable='box')

plt.xticks([0, L])

plt.yticks([0, D])

plt.xlabel('x [m]')

plt.ylabel('y [m]')

plt.show()

plt.figure(dpi = 500)

plt.contourf(X, Y, v1.T, 128, cmap = 'turbo')

# plt.colorbar()

plt.gca().set_aspect('equal', adjustable='box')

plt.xticks([0, L])

plt.yticks([0, D])

plt.xlabel('x [m]')

plt.ylabel('y [m]')

plt.show()

plt.figure(dpi = 500)

plt.contourf(X, Y, p1.T, 128, cmap = 'jet')

# plt.colorbar()

plt.gca().set_aspect('equal', adjustable='box')

plt.xticks([0, L])

plt.yticks([0, D])

plt.xlabel('x [m]')

plt.ylabel('y [m]')

plt.show()

References

[1] Khademinejad, Taha & Talebizadeh Sardari, Pouyan & Rahimzadeh, Hassan. (2015). Numerical Study of Unsteady Flow around a Square Cylinder in Compare with Circular Cylinder.

[2] Sohankar, A., Norbergb, C., Davidson, L., Numerical simulation of unsteady low-Reynolds number flow around rectangular cylinders at incidence, Journal of Wind Engineering and Industrial Aerodynamics, 69–71 (1997) 189-201.

[3] Cheng, M., Whyte, D. S., Lou, J., Numerical simulation of flow around a square cylinder in uniform-shear flow, Journal of Fluids and Structures, 23 (2007) 207–226.

[4] Lam, K., Lin, Y. F., L. Zou, Y. Liu, Numerical study of flow patterns and force characteristics for square and rectangular cylinders with wavy surfaces, Journal of Fluids and Structures, 28 (2012) 359–377.